STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GJ55_9BRASFatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (362 aa)    
Predicted Functional Partners:
R0G6E7_9BRAS
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 
 0.983
R0ISB8_9BRAS
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
 0.983
R0HNJ1_9BRAS
Reticulon-like protein.
   
 0.971
R0HPF4_9BRAS
Reticulon-like protein.
   
 0.971
R0ISU1_9BRAS
3Beta_HSD domain-containing protein.
   
 0.971
R0HEA4_9BRAS
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.
   
 0.967
R0GKM0_9BRAS
Uncharacterized protein.
   
 
 0.964
R0GWD9_9BRAS
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
  
  
 
0.900
R0IP58_9BRAS
Uncharacterized protein.
   
 0.884
R0F5H9_9BRAS
Uncharacterized protein.
  
 
 0.827
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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