R0GK35_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0GK35_9BRAS

Na_H_Exchanger domain-containing protein. (863 aa)

Predicted Functional Partners:

R0I3P6_9BRAS

0.771

R0GC61_9BRAS

0.760

R0HUV0_9BRAS

0.760

R0H5Q3_9BRAS

0.734

R0H8C1_9BRAS

0.731

R0FIR8_9BRAS

0.711

R0H5L8_9BRAS

0.711

R0GDB4_9BRAS

0.684

R0I6Y6_9BRAS

0.611

R0FEL0_9BRAS

0.581

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0FEL0_9BRAS	R0GDB4_9BRAS	R0FEL0	R0GDB4	Mannosyltransferase.	Uncharacterized protein.	0.514
R0FEL0_9BRAS	R0GK35_9BRAS	R0FEL0	R0GK35	Mannosyltransferase.	Na_H_Exchanger domain-containing protein.	0.581
R0FEL0_9BRAS	R0I6Y6_9BRAS	R0FEL0	R0I6Y6	Mannosyltransferase.	Uncharacterized protein.	0.704
R0FIR8_9BRAS	R0GK35_9BRAS	R0FIR8	R0GK35	Na_H_Exchanger domain-containing protein.	Na_H_Exchanger domain-containing protein.	0.711
R0FIR8_9BRAS	R0I3P6_9BRAS	R0FIR8	R0I3P6	Na_H_Exchanger domain-containing protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.875
R0GC61_9BRAS	R0GK35_9BRAS	R0GC61	R0GK35	Na_H_Exchanger domain-containing protein.	Na_H_Exchanger domain-containing protein.	0.760
R0GC61_9BRAS	R0I3P6_9BRAS	R0GC61	R0I3P6	Na_H_Exchanger domain-containing protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.881
R0GDB4_9BRAS	R0FEL0_9BRAS	R0GDB4	R0FEL0	Uncharacterized protein.	Mannosyltransferase.	0.514
R0GDB4_9BRAS	R0GK35_9BRAS	R0GDB4	R0GK35	Uncharacterized protein.	Na_H_Exchanger domain-containing protein.	0.684
R0GDB4_9BRAS	R0I6Y6_9BRAS	R0GDB4	R0I6Y6	Uncharacterized protein.	Uncharacterized protein.	0.518
R0GK35_9BRAS	R0FEL0_9BRAS	R0GK35	R0FEL0	Na_H_Exchanger domain-containing protein.	Mannosyltransferase.	0.581
R0GK35_9BRAS	R0FIR8_9BRAS	R0GK35	R0FIR8	Na_H_Exchanger domain-containing protein.	Na_H_Exchanger domain-containing protein.	0.711
R0GK35_9BRAS	R0GC61_9BRAS	R0GK35	R0GC61	Na_H_Exchanger domain-containing protein.	Na_H_Exchanger domain-containing protein.	0.760
R0GK35_9BRAS	R0GDB4_9BRAS	R0GK35	R0GDB4	Na_H_Exchanger domain-containing protein.	Uncharacterized protein.	0.684
R0GK35_9BRAS	R0H5L8_9BRAS	R0GK35	R0H5L8	Na_H_Exchanger domain-containing protein.	RCK N-terminal domain-containing protein.	0.711
R0GK35_9BRAS	R0H5Q3_9BRAS	R0GK35	R0H5Q3	Na_H_Exchanger domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.734
R0GK35_9BRAS	R0H8C1_9BRAS	R0GK35	R0H8C1	Na_H_Exchanger domain-containing protein.	RCK N-terminal domain-containing protein.	0.731
R0GK35_9BRAS	R0HUV0_9BRAS	R0GK35	R0HUV0	Na_H_Exchanger domain-containing protein.	Uncharacterized protein.	0.760
R0GK35_9BRAS	R0I3P6_9BRAS	R0GK35	R0I3P6	Na_H_Exchanger domain-containing protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.771
R0GK35_9BRAS	R0I6Y6_9BRAS	R0GK35	R0I6Y6	Na_H_Exchanger domain-containing protein.	Uncharacterized protein.	0.611