R0GKC3_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0GKC3_9BRAS

Uncharacterized protein. (243 aa)

Predicted Functional Partners:

R0HRQ7_9BRAS

0.596

R0HDY0_9BRAS

0.584

R0HGM8_9BRAS

0.559

R0HRB4_9BRAS

0.557

R0HAH2_9BRAS

0.546

R0G0Q8_9BRAS

0.538

R0GWT3_9BRAS

0.538

R0GCQ5_9BRAS

0.537

R0EYR7_9BRAS

0.474

R0GKZ6_9BRAS

0.474

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0EYR7_9BRAS	R0G0Q8_9BRAS	R0EYR7	R0G0Q8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Uncharacterized protein; Belongs to the NPH3 family.	0.612
R0EYR7_9BRAS	R0GCQ5_9BRAS	R0EYR7	R0GCQ5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Uncharacterized protein.	0.597
R0EYR7_9BRAS	R0GKC3_9BRAS	R0EYR7	R0GKC3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Uncharacterized protein.	0.474
R0EYR7_9BRAS	R0HDY0_9BRAS	R0EYR7	R0HDY0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	TPR_REGION domain-containing protein.	0.616
R0EYR7_9BRAS	R0HGM8_9BRAS	R0EYR7	R0HGM8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Uncharacterized protein.	0.782
R0EYR7_9BRAS	R0HRB4_9BRAS	R0EYR7	R0HRB4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.615
R0EYR7_9BRAS	R0HRQ7_9BRAS	R0EYR7	R0HRQ7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	Phytocyanin domain-containing protein.	0.568
R0G0Q8_9BRAS	R0EYR7_9BRAS	R0G0Q8	R0EYR7	Uncharacterized protein; Belongs to the NPH3 family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.612
R0G0Q8_9BRAS	R0GCQ5_9BRAS	R0G0Q8	R0GCQ5	Uncharacterized protein; Belongs to the NPH3 family.	Uncharacterized protein.	0.731
R0G0Q8_9BRAS	R0GKC3_9BRAS	R0G0Q8	R0GKC3	Uncharacterized protein; Belongs to the NPH3 family.	Uncharacterized protein.	0.538
R0G0Q8_9BRAS	R0HAH2_9BRAS	R0G0Q8	R0HAH2	Uncharacterized protein; Belongs to the NPH3 family.	AAI domain-containing protein.	0.775
R0G0Q8_9BRAS	R0HDY0_9BRAS	R0G0Q8	R0HDY0	Uncharacterized protein; Belongs to the NPH3 family.	TPR_REGION domain-containing protein.	0.734
R0G0Q8_9BRAS	R0HGM8_9BRAS	R0G0Q8	R0HGM8	Uncharacterized protein; Belongs to the NPH3 family.	Uncharacterized protein.	0.814
R0G0Q8_9BRAS	R0HRB4_9BRAS	R0G0Q8	R0HRB4	Uncharacterized protein; Belongs to the NPH3 family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.734
R0G0Q8_9BRAS	R0HRQ7_9BRAS	R0G0Q8	R0HRQ7	Uncharacterized protein; Belongs to the NPH3 family.	Phytocyanin domain-containing protein.	0.709
R0GCQ5_9BRAS	R0EYR7_9BRAS	R0GCQ5	R0EYR7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.597
R0GCQ5_9BRAS	R0G0Q8_9BRAS	R0GCQ5	R0G0Q8	Uncharacterized protein.	Uncharacterized protein; Belongs to the NPH3 family.	0.731
R0GCQ5_9BRAS	R0GKC3_9BRAS	R0GCQ5	R0GKC3	Uncharacterized protein.	Uncharacterized protein.	0.537
R0GCQ5_9BRAS	R0HAH2_9BRAS	R0GCQ5	R0HAH2	Uncharacterized protein.	AAI domain-containing protein.	0.507
R0GCQ5_9BRAS	R0HDY0_9BRAS	R0GCQ5	R0HDY0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.732