STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GMJ3_9BRASImportin subunit alpha; Belongs to the importin alpha family. (458 aa)    
Predicted Functional Partners:
R0F5S0_9BRAS
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
    
   0.675
R0G2L3_9BRAS
Importin N-terminal domain-containing protein.
   
 0.670
R0GME9_9BRAS
Importin N-terminal domain-containing protein.
   
 0.670
R0HS84_9BRAS
Importin N-terminal domain-containing protein.
   
 0.670
R0HWP4_9BRAS
MIF4G domain-containing protein.
   
 
 0.626
R0GAY0_9BRAS
RRM domain-containing protein.
    
 
 0.618
R0FVD6_9BRAS
Importin N-terminal domain-containing protein.
   
 
 0.600
R0IAZ1_9BRAS
Importin N-terminal domain-containing protein.
   
 
 0.600
R0GUW3_9BRAS
RanBD1 domain-containing protein.
   
 
 0.582
R0F0E0_9BRAS
IBB domain-containing protein.
  
     0.465
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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