STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GPR3_9BRASRNase H domain-containing protein. (393 aa)    
Predicted Functional Partners:
R0IGW5_9BRAS
ANAPC5 domain-containing protein.
   
 0.951
R0FAB3_9BRAS
WD_REPEATS_REGION domain-containing protein.
    
 0.950
R0G7T3_9BRAS
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.950
R0GYL7_9BRAS
Uncharacterized protein.
    
 0.950
R0HIK2_9BRAS
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.950
R0I9W8_9BRAS
TPR_REGION domain-containing protein.
    
 0.950
R0H641_9BRAS
HORMA domain-containing protein.
    
 0.942
R0HFL9_9BRAS
Uncharacterized protein.
    
 0.941
R0H8Z3_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.938
R0H7A4_9BRAS
GLTSCR1 domain-containing protein.
  
 0.902
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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