STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GW90_9BRASHSF_DOMAIN domain-containing protein. (473 aa)    
Predicted Functional Partners:
R0G3Z9_9BRAS
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.808
R0I5C2_9BRAS
HTH cro/C1-type domain-containing protein.
      
 0.725
R0H7C4_9BRAS
AP2/ERF domain-containing protein.
    
 
 0.711
R0GS70_9BRAS
Cytochrome c-type biogenesis protein.
      
 0.709
R0I523_9BRAS
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.707
R0IT90_9BRAS
Uncharacterized protein.
   
 
 0.707
R0GL41_9BRAS
HATPase_c domain-containing protein.
    
 0.623
R0FW36_9BRAS
Uncharacterized protein; Belongs to the heat shock protein 70 family.
    
 0.525
R0HI48_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.511
R0IGB1_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.511
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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