STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0GYU8_9BRASProtein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (194 aa)    
Predicted Functional Partners:
R0FEP1_9BRAS
Uncharacterized protein.
      
 0.841
R0GXT8_9BRAS
Uncharacterized protein.
      
 0.811
R0H8N9_9BRAS
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
      
 0.792
R0I0Y7_9BRAS
EGF_CA domain-containing protein.
      
 0.710
R0FUM5_9BRAS
Uncharacterized protein.
      
 0.702
R0GS75_9BRAS
Uncharacterized protein.
      
 0.702
R0H2R7_9BRAS
Uncharacterized protein.
      
 0.702
R0IA12_9BRAS
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.701
R0IQ36_9BRAS
Uncharacterized protein.
      
 0.701
R0HMC2_9BRAS
Uncharacterized protein.
      
 0.614
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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