STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0H9H7_9BRASPectinesterase; In the C-terminal section; belongs to the pectinesterase family. (582 aa)    
Predicted Functional Partners:
R0I6S7_9BRAS
Carboxypeptidase; Belongs to the peptidase S10 family.
    
 
 0.763
R0GCA3_9BRAS
Bulb-type lectin domain-containing protein.
      
 0.734
R0G117_9BRAS
Uncharacterized protein.
     
 0.723
R0H508_9BRAS
Pectate lyase.
  
 
 0.717
R0H9F0_9BRAS
PMEI domain-containing protein.
      
 0.711
R0GLD5_9BRAS
Bromo domain-containing protein.
      
 0.710
R0FJQ2_9BRAS
Pectate lyase.
   
 
 0.664
R0F991_9BRAS
Uncharacterized protein.
     
 0.662
R0HZM8_9BRAS
Uncharacterized protein.
     
 0.662
R0G629_9BRAS
Pectate lyase.
   
 
 0.658
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.