STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HA86_9BRASUncharacterized protein. (69 aa)    
Predicted Functional Partners:
R0I1H5_9BRAS
Stress-response A/B barrel domain-containing protein.
      
 0.840
R0HSJ6_9BRAS
Uncharacterized protein.
      
 0.731
R0HBP4_9BRAS
Uncharacterized protein.
      
 0.724
R0G7L7_9BRAS
GLOBIN domain-containing protein; Belongs to the globin family.
      
 0.702
R0GNY1_9BRAS
Acyl-[acyl-carrier-protein] desaturase; Introduction of a cis double bond between carbons of the acyl chain; Belongs to the fatty acid desaturase type 2 family.
      
 0.702
R0FCF9_9BRAS
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.581
R0GLP3_9BRAS
LOB domain-containing protein.
      
 0.539
R0GYW3_9BRAS
LOB domain-containing protein.
      
 0.539
R0I6Q7_9BRAS
LOB domain-containing protein.
      
 0.539
R0EYX1_9BRAS
SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.
      
 0.476
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.