R0HBP4_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0HBP4_9BRAS

Uncharacterized protein. (327 aa)

Predicted Functional Partners:

R0FCF9_9BRAS

0.910

R0GBE3_9BRAS

0.862

R0I6Y9_9BRAS

0.862

R0HSJ6_9BRAS

0.831

R0G7L7_9BRAS

0.816

R0GBM6_9BRAS

0.793

R0GX66_9BRAS

0.793

R0GQI6_9BRAS

0.792

R0G5V1_9BRAS

0.778

R0FE64_9BRAS

0.775

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0FCF9_9BRAS	R0FE64_9BRAS	R0FCF9	R0FE64	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.903
R0FCF9_9BRAS	R0G5V1_9BRAS	R0FCF9	R0G5V1	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	AP2/ERF domain-containing protein.	0.893
R0FCF9_9BRAS	R0GBE3_9BRAS	R0FCF9	R0GBE3	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.928
R0FCF9_9BRAS	R0HBP4_9BRAS	R0FCF9	R0HBP4	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.910
R0FCF9_9BRAS	R0HSJ6_9BRAS	R0FCF9	R0HSJ6	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.732
R0FCF9_9BRAS	R0I6Y9_9BRAS	R0FCF9	R0I6Y9	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	AP2/ERF domain-containing protein.	0.910
R0FE64_9BRAS	R0FCF9_9BRAS	R0FE64	R0FCF9	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.903
R0FE64_9BRAS	R0G5V1_9BRAS	R0FE64	R0G5V1	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	AP2/ERF domain-containing protein.	0.725
R0FE64_9BRAS	R0HBP4_9BRAS	R0FE64	R0HBP4	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	Uncharacterized protein.	0.775
R0FE64_9BRAS	R0I6Y9_9BRAS	R0FE64	R0I6Y9	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	AP2/ERF domain-containing protein.	0.756
R0G5V1_9BRAS	R0FCF9_9BRAS	R0G5V1	R0FCF9	AP2/ERF domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.893
R0G5V1_9BRAS	R0FE64_9BRAS	R0G5V1	R0FE64	AP2/ERF domain-containing protein.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.725
R0G5V1_9BRAS	R0GBE3_9BRAS	R0G5V1	R0GBE3	AP2/ERF domain-containing protein.	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	0.806
R0G5V1_9BRAS	R0HBP4_9BRAS	R0G5V1	R0HBP4	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.778
R0G5V1_9BRAS	R0HSJ6_9BRAS	R0G5V1	R0HSJ6	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.778
R0G7L7_9BRAS	R0GBM6_9BRAS	R0G7L7	R0GBM6	GLOBIN domain-containing protein; Belongs to the globin family.	Rhodanese domain-containing protein.	0.791
R0G7L7_9BRAS	R0GQI6_9BRAS	R0G7L7	R0GQI6	GLOBIN domain-containing protein; Belongs to the globin family.	Uncharacterized protein.	0.781
R0G7L7_9BRAS	R0GX66_9BRAS	R0G7L7	R0GX66	GLOBIN domain-containing protein; Belongs to the globin family.	Uncharacterized protein.	0.781
R0G7L7_9BRAS	R0HBP4_9BRAS	R0G7L7	R0HBP4	GLOBIN domain-containing protein; Belongs to the globin family.	Uncharacterized protein.	0.816
R0G7L7_9BRAS	R0HSJ6_9BRAS	R0G7L7	R0HSJ6	GLOBIN domain-containing protein; Belongs to the globin family.	Uncharacterized protein.	0.547