STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HCN2_9BRASCation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1179 aa)    
Predicted Functional Partners:
R0IE35_9BRAS
Uncharacterized protein.
    
 
 0.910
R0IL06_9BRAS
Uncharacterized protein.
      
 0.862
R0GVQ3_9BRAS
Uncharacterized protein.
    
 
 0.857
R0ICF5_9BRAS
C2H2-type domain-containing protein.
    
 
 0.855
R0GJK6_9BRAS
Uncharacterized protein.
      
 0.778
R0GQQ1_9BRAS
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
    
 0.777
R0GKV4_9BRAS
Uncharacterized protein.
      
 0.731
R0G5W6_9BRAS
RING-type domain-containing protein.
      
 0.710
R0GX14_9BRAS
Myb_CC_LHEQLE domain-containing protein.
   
 
 0.709
R0HBE3_9BRAS
RING-type domain-containing protein.
      
 0.542
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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