STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HFZ3_9BRASPyruvate carboxyltransferase domain-containing protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. (508 aa)    
Predicted Functional Partners:
R0I4D1_9BRAS
Uncharacterized protein.
  
 
 0.975
R0FBA1_9BRAS
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
  
 
 0.961
R0F1L2_9BRAS
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
  
 0.956
R0HDW7_9BRAS
Aconitase_C domain-containing protein.
  
 
 0.951
R0H5S4_9BRAS
Uncharacterized protein.
  
 
 0.933
R0HH31_9BRAS
Pyruvate carboxyltransferase domain-containing protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 
0.924
R0GD41_9BRAS
Uncharacterized protein.
   
  
 0.923
R0FNP8_9BRAS
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.918
R0IF57_9BRAS
Sulfotransferase; Belongs to the sulfotransferase 1 family.
   
  
 0.911
R0GPC6_9BRAS
Sulfotransferase; Belongs to the sulfotransferase 1 family.
   
  
 0.907
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.