STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HGZ8_9BRASRBR-type E3 ubiquitin transferase. (504 aa)    
Predicted Functional Partners:
R0GHI4_9BRAS
Uncharacterized protein.
      
 0.881
R0GTP2_9BRAS
Uncharacterized protein.
      
 0.754
R0I057_9BRAS
Uncharacterized protein.
   
  
 0.718
R0GMC2_9BRAS
RanBP2-type domain-containing protein.
   
  
 0.710
R0FQ53_9BRAS
Uncharacterized protein.
      
 0.702
R0GPN8_9BRAS
Uncharacterized protein.
      
 0.702
R0H9M5_9BRAS
Uncharacterized protein.
      
 0.702
R0IDI3_9BRAS
Uncharacterized protein.
      
 0.702
R0HQP2_9BRAS
CYTOSOL_AP domain-containing protein.
      
 0.701
R0H501_9BRAS
HECT domain-containing protein.
   
 
 0.636
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.