STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HPF6_9BRASUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)    
Predicted Functional Partners:
R0H501_9BRAS
HECT domain-containing protein.
   
 0.917
R0F123_9BRAS
HECT domain-containing protein.
   
 0.909
R0GZ13_9BRAS
Uncharacterized protein.
    
 0.827
R0H2R1_9BRAS
RING-type domain-containing protein.
    
 
 0.803
R0EUD0_9BRAS
J domain-containing protein.
   
  
 0.780
R0GRE4_9BRAS
Ubiquitin thioesterase.
    
 0.779
R0GTZ1_9BRAS
Uncharacterized protein.
      
 0.769
R0FQS3_9BRAS
Ubiquitin-like domain-containing protein.
   
 0.766
R0FYL0_9BRAS
Ubiquitin-like domain-containing protein.
   
 0.766
R0GAS0_9BRAS
F-box domain-containing protein.
      
 0.760
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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