STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0HYY8_9BRASE3 ubiquitin protein ligase. (878 aa)    
Predicted Functional Partners:
R0IHG2_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.978
R0GSK1_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.961
R0HI48_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.956
R0IGB1_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.956
R0FTF9_9BRAS
Histone H2B; Belongs to the histone H2B family.
    
 0.945
R0GT95_9BRAS
Histone domain-containing protein; Belongs to the histone H2B family.
    
 0.935
R0H7P4_9BRAS
Histone H2B; Belongs to the histone H2B family.
    
 0.935
R0HLX7_9BRAS
Histone H2B; Belongs to the histone H2B family.
    
 0.935
R0EY06_9BRAS
Histone H2B; Belongs to the histone H2B family.
    
 0.934
R0FHV8_9BRAS
Histone H2B; Belongs to the histone H2B family.
    
 0.934
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.