STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0I4E8_9BRASUncharacterized protein. (174 aa)    
Predicted Functional Partners:
R0F4L1_9BRAS
Uncharacterized protein.
      
 0.910
R0GNW1_9BRAS
Uncharacterized protein.
    
 
 0.749
R0HED7_9BRAS
DUF1421 domain-containing protein.
    
 0.539
R0HWJ0_9BRAS
Uncharacterized protein.
   
 
 0.502
R0ICA4_9BRAS
Uncharacterized protein.
   
  0.488
R0ETP8_9BRAS
Uncharacterized protein.
    
 0.483
R0EW58_9BRAS
Uncharacterized protein.
    
 0.483
R0FVD2_9BRAS
LIM zinc-binding domain-containing protein.
    
 0.483
R0G7G9_9BRAS
LIM zinc-binding domain-containing protein.
    
 0.483
R0GAF1_9BRAS
Uncharacterized protein.
    
 0.483
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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