STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0I5Q8_9BRASUncharacterized protein. (131 aa)    
Predicted Functional Partners:
R0H7B1_9BRAS
Na_H_Exchanger domain-containing protein.
      
 0.760
R0H022_9BRAS
Cytochrome b561 and DOMON domain-containing protein.
      
 0.702
R0F370_9BRAS
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
   
 0.679
R0GIX6_9BRAS
Uncharacterized protein.
      
 0.665
R0EUU2_9BRAS
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
   
 0.546
R0FY64_9BRAS
Methyltransf_11 domain-containing protein.
      
 0.542
R0HY73_9BRAS
HMA domain-containing protein.
      
 0.541
R0FW03_9BRAS
Uncharacterized protein.
      
 0.540
R0HSG7_9BRAS
Protein kinase domain-containing protein.
      
 0.540
R0GUJ7_9BRAS
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.527
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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