STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0IB82_9BRASAa_trans domain-containing protein. (475 aa)    
Predicted Functional Partners:
R0HCL2_9BRAS
WAT1-related protein.
      
 0.775
R0HVH2_9BRAS
WAT1-related protein.
      
 0.775
R0FWC8_9BRAS
WAT1-related protein.
      
 0.734
R0F3M8_9BRAS
AA_permease_C domain-containing protein.
   
  
 0.596
R0FDK8_9BRAS
AA_permease_C domain-containing protein.
   
  
 0.596
R0G168_9BRAS
J domain-containing protein.
     
 0.585
R0GCU2_9BRAS
Glutamine synthetase.
      
 0.565
R0I3G9_9BRAS
Glutamine synthetase.
      
 0.565
R0FNY4_9BRAS
Uncharacterized protein.
   
  
 0.545
R0FG73_9BRAS
Glutamine synthetase.
      
 0.542
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.