STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R0IKA0_9BRASULP_PROTEASE domain-containing protein. (563 aa)    
Predicted Functional Partners:
R0H2J0_9BRAS
Small ubiquitin-related modifier.
    
 0.953
R0GST6_9BRAS
Small ubiquitin-related modifier.
    
 0.921
R0GC00_9BRAS
Ubiquitin-like domain-containing protein.
    
 0.920
R0FYP2_9BRAS
Rad60-SLD domain-containing protein.
    
 0.890
R0GUL9_9BRAS
SP-RING-type domain-containing protein.
  
 
 
 0.836
R0FQM8_9BRAS
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.829
R0HBD0_9BRAS
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
    
 
 0.813
R0G8L6_9BRAS
Uncharacterized protein.
    
 
 0.809
R0GUE5_9BRAS
Tr-type G domain-containing protein.
      
 0.778
R0G6Y0_9BRAS
SP-RING-type domain-containing protein.
    
 
 0.775
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.
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