STRINGSTRING
XP_006300676.1 protein (Capsella rubella) - STRING interaction network
"XP_006300676.1" - Uncharacterized protein in Capsella rubella
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_006300676.1Uncharacterized protein; Encoded by transcript CARUB_v10019715m; Belongs to the argonaute family (989 aa)    
Predicted Functional Partners:
XP_006289431.1
Uncharacterized protein; Encoded by transcript CARUB_v10002936m; Belongs to the helicase family. Dicer subfamily (1700 aa)
     
 
  0.979
XP_006287292.1
Uncharacterized protein; Encoded by transcript CARUB_v10000486m (616 aa)
     
   
  0.954
XP_006306578.1
Uncharacterized protein; Encoded by transcript CARUB_v10008073m; Belongs to the helicase family. Dicer subfamily (1906 aa)
     
 
  0.935
XP_006300010.1
Uncharacterized protein; Encoded by transcript CARUB_v10016233m; Belongs to the helicase family. Dicer subfamily (1392 aa)
     
 
  0.935
XP_006290500.1
Uncharacterized protein; Encoded by transcript CARUB_v10016574m (1446 aa)
     
 
  0.899
XP_006293553.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1959 aa)
     
 
  0.897
XP_006304196.1
Uncharacterized protein; Encoded by transcript CARUB_v10010275m (216 aa)
           
  0.883
XP_006286933.1
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1165 aa)
     
   
  0.878
XP_006291418.1
Uncharacterized protein; Encoded by transcript CARUB_v10017556m (347 aa)
       
 
  0.876
XP_006305236.1
Uncharacterized protein; Encoded by transcript CARUB_v10009604m (348 aa)
       
 
  0.870
Your Current Organism:
Capsella rubella
NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella, Capsella rubella Reut.
Server load: low (14%) [HD]