STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhSPutative ABC transport system%2C membrane protein. (367 aa)    
Predicted Functional Partners:
ybhF_1
Putative BAC transport system%2C two-fused ATP-binding domains protein.
  
 0.995
ybhF_2
ABC-type multidrug transport system%2C ATPase component.
  
 0.948
CUP25233.1
Putative ABC transport system%2C lipoprotein.
 
  
 0.946
CUP25200.1
Outer membrane efflux protein.
 
   
 0.929
lptB_2
ABC transporter ATP-binding protein.
   
 0.881
ybhR_1
Putative ABC transport system%2C membrane protein.
 
  
 
0.843
lolD_1
ABC transporter related protein.
    
 0.585
CUP40384.1
Hemolysin D.
 
  
 0.538
potA
ABC transporter related protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 
  0.484
CUP79901.1
Hemolysin D.
 
  
 0.467
Your Current Organism:
Bacteroides uniformis
NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054
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