STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP26906.1Histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. (90 aa)    
Predicted Functional Partners:
hup_1
Integration host factor IHF subunit alpha; Belongs to the bacterial histone-like protein family.
 
     0.853
rimO
30S ribosomal protein S12; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
   0.739
ftsY
Putative recognition particle-docking protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.729
ravA_1
Putative magnesium chelatase.
       0.632
CUP35174.1
DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
     0.608
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.588
CUP26815.1
Uncharacterised protein.
       0.553
CUP27001.1
DUF58 domain-containing protein; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
       0.553
CUP27024.1
Membrane exported protein.
       0.548
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.544
Your Current Organism:
Bacteroides uniformis
NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.