STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP92893.1Predicted beta-xylosidase. (369 aa)    
Predicted Functional Partners:
CUP87899.1
Uncharacterized protein conserved in bacteria.
 
     0.702
abfA
alpha-L-arabinofuranosidase.
 
   
 0.692
xynD_6
endo-1%2C4-beta-xylanase D; Belongs to the glycosyl hydrolase 43 family.
   
 0.580
lacZ_12
Beta-galactosidase.
 
     0.579
xynD_3
Arabinan endo-1%2C5-alpha-L-arabinosidase A.
   
 0.567
xynD_5
Glycoside hydrolase 43.
   
 0.558
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.549
CUP82400.1
alpha-L-arabinofuranosidase.
 
   
 0.547
CUP82351.1
Glycoside hydrolase.
 
   
 0.536
CUP92915.1
Putative exported hyaluronidase.
       0.476
Your Current Organism:
Bacteroides uniformis
NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054
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