STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (315 aa)    
Predicted Functional Partners:
KXG91406.1
CRISPR system CASCADE complex protein CasE; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.954
KXG91404.1
CRISPR-associated endoribonuclease Cas2; KEGG: brm:Bmur_2247 5.3e-20 DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 9.97.
 
     0.952
KXG91408.1
CRISPR system CASCADE complex protein CasC.
 
  
 0.943
KXG91407.1
CRISPR system CASCADE complex protein CasD; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.933
KXG91410.1
CRISPR system CASCADE complex protein CasA; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.931
KXG91411.1
CRISPR-associated helicase Cas3; KEGG: csy:CENSYa_0142 9.5e-07 helicase K07012; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.916
KXG91409.1
Putative CRISPR system CASCADE complex protein CasB; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.902
KXG89724.1
Hypothetical protein.
    
   0.453
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.