rpsT protein (Atopobium vaginae) - STRING interaction network

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Score

rpsT

Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)

Predicted Functional Partners:

rpsO

0.986

rplU

0.986

rpsF

0.985

rpsP

0.982

rpmB

0.981

rplM

0.981

rpmE

0.979

rpmA

0.978

rpoC

0.977

rpmH

0.976

Your Current Organism:

Atopobium vaginae

NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	HMPREF3232_00930	HMPREF3232_00453	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.983
rplM	rpmA	HMPREF3232_00930	HMPREF3232_00454	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.	0.988
rplM	rpmB	HMPREF3232_00930	HMPREF3232_00413	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family.	0.980
rplM	rpmE	HMPREF3232_00930	HMPREF3232_00967	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.975
rplM	rpmH	HMPREF3232_00930	HMPREF3232_01405	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L34; KEGG: rak:A1C_04775 1.2e-08 rpmH; 50S ribosomal protein L34 K02914; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL34 family.	0.967
rplM	rpoC	HMPREF3232_00930	HMPREF3232_01297	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
rplM	rpsF	HMPREF3232_00930	HMPREF3232_01423	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rplM	rpsO	HMPREF3232_00930	HMPREF3232_00070	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.981
rplM	rpsP	HMPREF3232_00930	HMPREF3232_01100	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.	0.982
rplM	rpsT	HMPREF3232_00930	HMPREF3232_00057	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.981
rplU	rplM	HMPREF3232_00453	HMPREF3232_00930	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.983
rplU	rpmA	HMPREF3232_00453	HMPREF3232_00454	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplU	rpmB	HMPREF3232_00453	HMPREF3232_00413	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family.	0.981
rplU	rpmE	HMPREF3232_00453	HMPREF3232_00967	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L31; Binds the 23S rRNA.	0.978
rplU	rpmH	HMPREF3232_00453	HMPREF3232_01405	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L34; KEGG: rak:A1C_04775 1.2e-08 rpmH; 50S ribosomal protein L34 K02914; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL34 family.	0.976
rplU	rpoC	HMPREF3232_00453	HMPREF3232_01297	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
rplU	rpsF	HMPREF3232_00453	HMPREF3232_01423	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rplU	rpsO	HMPREF3232_00453	HMPREF3232_00070	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.972
rplU	rpsP	HMPREF3232_00453	HMPREF3232_01100	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.	0.983
rplU	rpsT	HMPREF3232_00453	HMPREF3232_00057	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.986