STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjHypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (552 aa)    
Predicted Functional Partners:
KXG91335.1
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.1e-106 h16_A1582; DNA translocase FtsK K03466; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the FtsK/SpoIIIE/SftA family.
 
    0.949
KXG91336.1
Hypothetical protein; KEGG: cjk:jk0707 0.0084 aceF; dihydrolipoamide acetyltransferase K00658; Psort location: CytoplasmicMembrane, score: 9.55.
  
    0.779
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
  
 0.755
KXG88547.1
Putative dihydrodipicolinate synthase; KEGG: cgo:Corgl_1546 2.6e-66 dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the DapA family.
 
  
 0.725
KXG91337.1
Hypothetical protein; KEGG: efu:HMPREF0351_11257 5.8e-30 trpF; N-(5'phosphoribosyl)anthranilate isomerase K09767; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0234 family.
  
    0.721
KXG88347.1
KEGG: apv:Apar_0345 2.0e-75 polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I; Psort location: Cytoplasmic, score: 9.97.
  
    0.647
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
  
 0.610
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.567
KXG91338.1
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
     
 0.546
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
  
 
 0.544
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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