STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpBTryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (396 aa)    
Predicted Functional Partners:
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 0.999
trpC
KEGG: ere:EUBREC_2977 1.7e-62 trpC; indole-3-glycerol-phosphate synthase; K01609 indole-3-glycerol phosphate synthase; Psort location: Cytoplasmic, score: 7.50; Belongs to the TrpC family.
 
 0.999
trpF
KEGG: ova:OBV_43880 1.3e-41 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817; Psort location: Cytoplasmic, score: 7.50; Belongs to the TrpF family.
 
 0.998
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
 0.991
KXG91348.1
Glutamine amidotransferase, class I; KEGG: ova:OBV_43850 1.5e-61 trpG; anthranilate synthase component II K01658; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.983
KXG91349.1
Chorismate binding enzyme; KEGG: ere:EUBREC_2980 5.0e-150 anthranilate/para-aminobenzoate synthase component I, TrpE; K01657 anthranilate synthase component I; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.974
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.899
KXG90803.1
KEGG: gvg:HMPREF0421_21032 6.7e-116 cysE; serine O-acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.67.
     
 0.878
KXG90804.1
Cysteine synthase A; KEGG: gvh:HMPREF9231_0553 2.2e-149 cysK; cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.793
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.754
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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