STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG91248.1KEGG: sor:SOR_1377 9.3e-142 licA; choline kinase; Psort location: Cytoplasmic, score: 7.50. (610 aa)    
Predicted Functional Partners:
KXG91250.1
LICD family protein; KEGG: ols:Olsu_0585 5.7e-94 LicD family protein; K07271 lipopolysaccharide cholinephosphotransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.972
KXG91247.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.962
KXG90627.1
KEGG: sor:SOR_1533 3.3e-240 PTS system, IIABC component; K02808 PTS system, sucrose-specific IIA component; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.943
KXG89446.1
Phosphotransferase system, EIIC; KEGG: pta:HPL003_08735 5.9e-92 PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.943
KXG88856.1
LICD family protein; KEGG: apv:Apar_1004 7.7e-83 LicD family protein; K07271 lipopolysaccharide cholinephosphotransferase; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.900
KXG91249.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.890
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.873
KXG89440.1
Putative N-acetylmuramic acid phosphotransfer permease; KEGG: gte:GTCCBUS3UF5_22650 6.7e-84 phosphotransferase system EIIC; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.823
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
  0.802
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
   
 
 0.790
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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