STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (113 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
 0.999
KXG90265.1
Hypothetical protein; KEGG: scl:sce6489 9.6e-05 exodeoxyribonuclease VII small subunit K03602.
     
  0.927
KXG91275.1
Histidine triad domain protein; KEGG: rme:Rmet_3238 2.7e-23 diadenosine tetraphosphate (Ap4A) hydrolase-like protein K02503; Psort location: Cytoplasmic, score: 7.50.
  
    0.818
KXG90320.1
Putative RNA polymerase sigma-B factor; KEGG: amt:Amet_2694 4.3e-25 RNA polymerase sigma-28 subunit FliA/WhiG K02405; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family.
    
   0.666
KXG91086.1
KEGG: ols:Olsu_0735 7.8e-232 exonuclease RecJ K07462; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.623
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.610
KXG88347.1
KEGG: apv:Apar_0345 2.0e-75 polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.593
KXG88502.1
DnaQ family exonuclease/DinG family helicase; KEGG: ols:Olsu_0005 2.3e-177 DNA polymerase III subunit epsilon K03722; Psort location: Cytoplasmic, score: 9.97.
   
  
 0.560
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.546
KXG91278.1
Putative neutral zinc metallopeptidase; KEGG: efc:EFAU004_02238 3.6e-37 Zn-dependent protease K06973; Psort location: CytoplasmicMembrane, score: 10.00.
       0.544
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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