Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXG91089.1 | rplM | HMPREF3232_00196 | HMPREF3232_00930 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.912 |
| KXG91089.1 | rplR | HMPREF3232_00196 | HMPREF3232_01259 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.690 |
| KXG91089.1 | rplS | HMPREF3232_00196 | HMPREF3232_00139 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.830 |
| KXG91089.1 | rplT | HMPREF3232_00196 | HMPREF3232_00198 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| KXG91089.1 | rplU | HMPREF3232_00196 | HMPREF3232_00453 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.835 |
| KXG91089.1 | rpmA | HMPREF3232_00196 | HMPREF3232_00454 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family. | 0.799 |
| KXG91089.1 | rpmI | HMPREF3232_00196 | HMPREF3232_00197 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL35 family. | 0.974 |
| KXG91089.1 | rpoC | HMPREF3232_00196 | HMPREF3232_01297 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.805 |
| KXG91089.1 | rpsF | HMPREF3232_00196 | HMPREF3232_01423 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.947 |
| KXG91089.1 | rpsI | HMPREF3232_00196 | HMPREF3232_00929 | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | Ribosomal protein S9; KEGG: apb:SAR116_0492 1.8e-26 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.67; Belongs to the universal ribosomal protein uS9 family. | 0.937 |
| rplM | KXG91089.1 | HMPREF3232_00930 | HMPREF3232_00196 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | KEGG: rha:RHA1_ro00963 5.9e-37 infC; translation initiation factor IF-3 K02520; Psort location: Cytoplasmic, score: 9.97; Belongs to the IF-3 family. | 0.912 |
| rplM | rplR | HMPREF3232_00930 | HMPREF3232_01259 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplM | rplS | HMPREF3232_00930 | HMPREF3232_00139 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.988 |
| rplM | rplT | HMPREF3232_00930 | HMPREF3232_00198 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.995 |
| rplM | rplU | HMPREF3232_00930 | HMPREF3232_00453 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.983 |
| rplM | rpmA | HMPREF3232_00930 | HMPREF3232_00454 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family. | 0.988 |
| rplM | rpmI | HMPREF3232_00930 | HMPREF3232_00197 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL35 family. | 0.979 |
| rplM | rpoC | HMPREF3232_00930 | HMPREF3232_01297 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
| rplM | rpsF | HMPREF3232_00930 | HMPREF3232_01423 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
| rplM | rpsI | HMPREF3232_00930 | HMPREF3232_00929 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S9; KEGG: apb:SAR116_0492 1.8e-26 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.67; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
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