STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG91106.1Hypothetical protein; KEGG: cjs:CJS3_0619 1.6e-06 Type III restriction-modification system DNA endonuclease. (957 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.996
KXG88502.1
DnaQ family exonuclease/DinG family helicase; KEGG: ols:Olsu_0005 2.3e-177 DNA polymerase III subunit epsilon K03722; Psort location: Cytoplasmic, score: 9.97.
   
 0.994
KXG91314.1
Hypothetical protein; KEGG: ols:Olsu_0985 3.4e-32 RNA polymerase Rpb6; K03060 DNA-directed RNA polymerase subunit omega; Psort location: Cytoplasmic, score: 7.50.
    
  0.991
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.991
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.987
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.962
KXG91275.1
Histidine triad domain protein; KEGG: rme:Rmet_3238 2.7e-23 diadenosine tetraphosphate (Ap4A) hydrolase-like protein K02503; Psort location: Cytoplasmic, score: 7.50.
  
 
  0.822
KXG91108.1
Hypothetical protein; KEGG: ttm:Tthe_0777 6.2e-81 DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.792
KXG91107.1
Hypothetical protein; KEGG: pub:SAR11_0507 0.00044 dnaX; DNA-directed DNA polymerase subunit gamma/tau K02343.
       0.773
KXG90987.1
KEGG: ols:Olsu_0499 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
   
   0.759
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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