STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG91110.1Hypothetical protein; KEGG: rho:RHOM_13395 1.6e-21 RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (104 aa)    
Predicted Functional Partners:
KXG89470.1
Putative 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: apv:Apar_0053 1.9e-72 TrmA family RNA methyltransferase; K00599; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
      0.890
KXG89129.1
KEGG: ols:Olsu_0834 6.2e-113 23S rRNA m(5)U-1939 methyltransferase K00599; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
      0.822
KXG91109.1
Hypothetical protein.
       0.567
KXG91111.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.565
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.555
KXG90269.1
Acetyltransferase, GNAT family; KEGG: bbb:BIF_01130 6.4e-24 Acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
     0.499
KXG91112.1
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.465
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.