STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90828.1Aminotransferase, class V; KEGG: ols:Olsu_0922 7.7e-99 cysteine desulfurase K04487; Psort location: Cytoplasmic, score: 9.97. (391 aa)    
Predicted Functional Partners:
KXG89587.1
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 6.3e-06 cysteine desulfurase; Psort location: Cytoplasmic, score: 7.50.
  
 0.987
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
 0.976
KXG90786.1
KEGG: apv:Apar_0913 3.6e-108 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.967
KXG90872.1
NifU-like protein; KEGG: apb:SAR116_1595 1.3e-09 nitrogen-fixing NifU domain-containing protein; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.830
KXG90826.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
  
  0.829
KXG90829.1
KEGG: ols:Olsu_0921 6.4e-63 ribulose-5-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 7.50; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.805
KXG90827.1
Zinc ribbon domain protein; KEGG: spu:583203 0.00068 uncharacterized LOC583203; K10667 E3 ubiquitin-protein ligase RNF8; Psort location: Cytoplasmic, score: 7.50.
       0.744
acpP
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.721
KXG90299.1
Hypothetical protein; KEGG: ooe:OEOE_0287 7.5e-05 D-alanyl transfer protein; K14188 D-alanine--poly(phosphoribitol) ligase subunit 2; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.721
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase [NAD(P)+ ] protein; KEGG: ols:Olsu_0920 4.7e-99 glycerol-3-phosphate dehydrogenase K00057; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.656
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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