STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90835.1S4 domain protein; KEGG: ols:Olsu_0914 1.8e-67 ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 9.67; Belongs to the pseudouridine synthase RsuA family. (285 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: ols:Olsu_0916 2.2e-101 cytidylate kinase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.982
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.948
KXG90836.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.948
KXG90837.1
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
  
 0.918
KXG90882.1
THUMP domain protein; KEGG: ols:Olsu_0578 4.0e-157 THUMP domain-containing protein; K12297 23S rRNA (guanine2445-N2)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.783
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.726
KXG89408.1
Exodeoxyribonuclease III; KEGG: apv:Apar_0110 4.2e-107 exodeoxyribonuclease III Xth K01142; Psort location: Cytoplasmic, score: 9.97.
  
    0.692
KXG90838.1
Peptidase, M50 family; KEGG: clo:HMPREF0868_1047 9.2e-32 M50 family peptidase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.628
KXG90840.1
KEGG: mox:DAMO_2815 2.7e-135 putative ABC transporter, ATP-binding protein with duplicated ATPase domains K06158; Psort location: Cytoplasmic, score: 9.97.
 
     0.609
KXG90740.1
NusB family protein; KEGG: ols:Olsu_1070 5.4e-43 NusB/RsmB/TIM44; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.562
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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