STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90864.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (385 aa)    
Predicted Functional Partners:
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.977
KXG90278.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.
  
 0.975
KXG90855.1
Aminotransferase, class I/II; KEGG: gva:HMPREF0424_1311 1.4e-200 aminotransferase AlaT K14260; Psort location: Cytoplasmic, score: 7.50.
    
 0.900
KXG90297.1
AMP-binding enzyme; KEGG: tsu:Tresu_1001 2.5e-109 phenylalanine racemase; Psort location: Cytoplasmic, score: 9.97.
    
 0.890
KXG90862.1
Hydrolase, P-loop family; KEGG: efc:EFAU004_00653 1.4e-19 ATPase K06925; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.878
KXG90299.1
Hypothetical protein; KEGG: ooe:OEOE_0287 7.5e-05 D-alanyl transfer protein; K14188 D-alanine--poly(phosphoribitol) ligase subunit 2; Psort location: Cytoplasmic, score: 7.50.
    
 0.778
tsaD
Ribosomal-protein-alanine acetyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.745
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.729
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
 
  
 0.725
KXG90622.1
Branched-chain-amino-acid transaminase; KEGG: ols:Olsu_1384 3.7e-106 branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase.
    
 0.667
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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