STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90883.1Hypothetical protein; KEGG: sgg:SGGBAA2069_c04520 2.3e-26 deoD; pnp/Udp family phosphorylase; Psort location: Cytoplasmic, score: 7.50. (249 aa)    
Predicted Functional Partners:
KXG89250.1
Cytidine/deoxycytidylate deaminase family protein; KEGG: mcu:HMPREF0573_11778 1.0e-73 cdd; cytidine deaminase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.828
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
 0.806
pyrR
Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
    
 0.784
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.778
KXG90884.1
Hypothetical protein; KEGG: krh:KRH_21070 0.0031 putative acetyltransferase.
       0.762
pyrD
Putative dihydroorotate oxidase, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
    
 0.539
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
    
 0.519
KXG88494.1
Adenylosuccinate lyase; KEGG: ols:Olsu_1764 3.8e-184 Adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 9.97.
    
 0.511
KXG91066.1
KEGG: ere:EUBREC_3553 1.1e-42 serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
  
     0.498
KXG88452.1
Putative cytidine/uridine-specific hydrolase; KEGG: acl:ACL_1373 2.4e-86 ribonucleoside hydrolase RihC K12700; Psort location: Cytoplasmic, score: 7.50.
    
 0.487
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.