STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBRibosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family. (66 aa)    
Predicted Functional Partners:
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.990
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 8.1e-08 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.988
rpmF
Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.983
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
 
 0.982
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
 
 0.982
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.981
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.981
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.981
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.981
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.981
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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