STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90790.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (143 aa)    
Predicted Functional Partners:
KXG90789.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.937
KXG88592.1
Hypothetical protein; KEGG: lip:LI0433 0.0041 dsbD; hypothetical protein; K04084 thiol:disulfide interchange protein DsbD; Psort location: CytoplasmicMembrane, score: 10.00.
     0.929
KXG90788.1
Transcriptional regulator, TetR family.
 
     0.891
KXG89013.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.826
KXG89330.1
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.2e-94 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.487
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.