STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90582.1Flavin reductase; KEGG: aur:HMPREF9243_0736 5.4e-66 flavin reductase. (193 aa)    
Predicted Functional Partners:
KXG90857.1
Metallo-beta-lactamase domain protein; KEGG: dth:DICTH_1660 4.4e-48 nitric oxide reductase; Psort location: Cytoplasmic, score: 9.97.
    
 0.920
KXG89327.1
Tat pathway signal sequence domain protein; KEGG: mah:MEALZ_2389 1.6e-08 histidine kinase; K07679 two-component system, NarL family, sensor histidine kinase EvgS; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.716
KXG90585.1
Riboflavin kinase; KEGG: ols:Olsu_0999 9.1e-48 riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
    
 0.684
KXG89326.1
KEGG: sgo:SGO_2099 7.8e-42 ABC transporter ATP-binding protein K15600; Psort location: CytoplasmicMembrane, score: 9.96.
  
 
 0.585
KXG89328.1
KEGG: apb:SAR116_1967 9.9e-35 ABC transporter permease K15599; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.546
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.537
KXG89343.1
Nitroreductase family protein; KEGG: fnu:FN1254 5.7e-23 dihydropteridine reductase K00540; Psort location: Cytoplasmic, score: 7.50.
    
 0.512
KXG88461.1
FG-GAP repeat protein; KEGG: npu:Npun_F1457 2.1e-21 outer membrane adhesin-like protein; Psort location: CytoplasmicMembrane, score: 9.36.
  
     0.486
KXG89332.1
DJ-1 family protein; KEGG: scp:HMPREF0833_10842 6.0e-28 rimI; ribosomal-protein-alanine acetyltransferase K03152; Psort location: Cytoplasmic, score: 7.50.
    
 0.475
KXG90570.1
ABC transporter, ATP-binding protein; KEGG: bde:BDP_0608 1.6e-73 livG; branched-chain amino acid transport ATP-binding protein livG K01995; Psort location: CytoplasmicMembrane, score: 8.78.
    
  0.444
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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