STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90624.1Tat pathway signal sequence domain protein; KEGG: bbp:BBPR_0138 1.0e-55 oligosaccharide deacetylase; Psort location: Cytoplasmic, score: 9.67. (510 aa)    
Predicted Functional Partners:
KXG90594.1
KEGG: clo:HMPREF0868_0486 4.2e-82 glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.840
KXG88872.1
Hypothetical protein; KEGG: ols:Olsu_1441 9.3e-94 glucan 1,3-beta-glucosidase; K01210 glucan 1,3-beta-glucosidase; Psort location: Cytoplasmic, score: 7.50; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.683
KXG90622.1
Branched-chain-amino-acid transaminase; KEGG: ols:Olsu_1384 3.7e-106 branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase.
       0.507
KXG90623.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.488
KXG91306.1
Putative dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
    
  0.466
KXG88479.1
Protein phosphatase 2C; KEGG: ols:Olsu_1756 4.7e-138 protein serine/threonine phosphatase K01090; Psort location: Cytoplasmic, score: 7.50.
  
    0.446
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
 
     0.445
KXG91303.1
Glycosyltransferase, group 2 family protein; KEGG: bsr:I33_3547 7.3e-23 YveT; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.441
hisS
histidine--tRNA ligase; KEGG: ols:Olsu_1380 1.8e-161 histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 10.00.
       0.439
KXG88425.1
LPXTG-motif protein cell wall anchor domain protein; KEGG: cfa:491027 8.7e-11 CDK12, CRKRS; cyclin-dependent kinase 12; K08819 cyclin-dependent kinase 12/13; Psort location: Cellwall, score: 10.00.
   
 
 0.429
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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