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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90524.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (59 aa)    
Predicted Functional Partners:
KXG90525.1
Bacterial type II secretion system protein F domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
KXG90523.1
Bacterial type II secretion system protein F domain protein; KEGG: ccs:CCNA_03035 2.8e-07 tyrosine phenol-lyase K12511; Psort location: CytoplasmicMembrane, score: 8.16.
       0.727
KXG90526.1
Type II/IV secretion system protein; KEGG: reh:H16_A0983 9.1e-80 cpaF3; flp pilus assembly ATPase CpaF K02283; Psort location: Cytoplasmic, score: 9.89.
       0.693
KXG90528.1
Hypothetical protein; KEGG: bac:BamMC406_3694 3.8e-05 exopolysaccharide tyrosine-protein kinase; Psort location: Cytoplasmic, score: 7.50.
       0.693
KXG90522.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.544
KXG90521.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.442
KXG90529.1
Putative Flp pilus assembly protein CpaB.
       0.439
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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