STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90299.1Hypothetical protein; KEGG: ooe:OEOE_0287 7.5e-05 D-alanyl transfer protein; K14188 D-alanine--poly(phosphoribitol) ligase subunit 2; Psort location: Cytoplasmic, score: 7.50. (81 aa)    
Predicted Functional Partners:
KXG90297.1
AMP-binding enzyme; KEGG: tsu:Tresu_1001 2.5e-109 phenylalanine racemase; Psort location: Cytoplasmic, score: 9.97.
 
 0.997
KXG90987.1
KEGG: ols:Olsu_0499 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
   
 0.991
KXG90200.1
MBOAT family protein; KEGG: dat:HRM2_03620 1.0e-40 algI1; protein AlgI1; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.976
KXG90295.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
 
 0.950
KXG90298.1
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; KEGG: ols:Olsu_0510 1.7e-110 Orn/DAP/Arg decarboxylase 2; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.945
KXG91012.1
4Fe-4S binding domain protein; KEGG: mru:mru_0830 3.5e-09 ferredoxin; K00205 formylmethanofuran dehydrogenase subunit F; Psort location: Cytoplasmic, score: 7.50.
   
 0.943
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.904
rpmF
Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.893
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.885
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.880
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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