STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90300.1DNA/RNA non-specific endonuclease; KEGG: spa:M6_Spy1739 5.5e-41 streptodornase K15051; Psort location: Cytoplasmic, score: 7.50. (243 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.642
KXG91317.1
ComEC/Rec2-like protein; KEGG: sfr:Sfri_2742 0.0018 NADH dehydrogenase (quinone) K05903; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.581
KXG90619.1
Putative dipeptidase B; KEGG: lam:LA2_07315 1.0e-199 dipeptidase; K08659 dipeptidase; Psort location: Cytoplasmic, score: 7.50.
 
     0.496
KXG90892.1
Cell wall-binding repeat protein; KEGG: sgg:SGGBAA2069_c10420 2.0e-13 gtfB1; glucosyltransferase-I K00689; Psort location: Extracellular, score: 8.91.
 
     0.474
KXG90299.1
Hypothetical protein; KEGG: ooe:OEOE_0287 7.5e-05 D-alanyl transfer protein; K14188 D-alanine--poly(phosphoribitol) ligase subunit 2; Psort location: Cytoplasmic, score: 7.50.
       0.402
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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