STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG90320.1Putative RNA polymerase sigma-B factor; KEGG: amt:Amet_2694 4.3e-25 RNA polymerase sigma-28 subunit FliA/WhiG K02405; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. (286 aa)    
Predicted Functional Partners:
KXG90800.1
STAS domain protein; KEGG: cni:Calni_0067 9.3e-10 anti-sigma regulatory factor, serine/threonine protein kinase; K04757 anti-sigma B factor; Psort location: Cytoplasmic, score: 7.50; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.994
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.970
KXG88880.1
STAS domain protein; KEGG: cau:Caur_1474 0.0011 WecB/TagA/CpsF family glycosyl transferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.910
KXG90801.1
Stage II sporulation protein E; KEGG: awo:Awo_c32270 5.0e-23 phosphoprotein phosphatase K07315; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.872
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.833
KXG90319.1
Hypothetical protein; KEGG: apr:Apre_0008 0.0018 putative anti-sigma regulatory factor; K04757 anti-sigma B factor; Psort location: Cytoplasmic, score: 7.50.
       0.786
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.751
KXG91314.1
Hypothetical protein; KEGG: ols:Olsu_0985 3.4e-32 RNA polymerase Rpb6; K03060 DNA-directed RNA polymerase subunit omega; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.727
KXG89148.1
Hypothetical protein; KEGG: mmw:Mmwyl1_1672 8.8e-06 beta strand repeat-containing protein; Psort location: Cellwall, score: 9.39.
  
 
 0.723
KXG88557.1
Thioredoxin; KEGG: cdp:CD241_2253 2.1e-25 trxC; thioredoxin K03671; Psort location: Cytoplasmic, score: 9.97; Belongs to the thioredoxin family.
    
 
 0.691
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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