STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89804.1Site-specific recombinase, phage integrase family; KEGG: bqy:MUS_1239 5.5e-20 ATP synthase C chain (lipid-binding protein)(dicyclohexylcarbodiimide-binding protein); Psort location: Cytoplasmic, score: 7.50; Belongs to the 'phage' integrase family. (362 aa)    
Predicted Functional Partners:
KXG90987.1
KEGG: ols:Olsu_0499 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
    
 0.902
KXG89805.1
DNA-binding helix-turn-helix protein; KEGG: apb:SAR116_1068 0.0011 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.754
KXG89816.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.695
KXG90486.1
Hypothetical protein.
  
    0.583
KXG88864.1
Hypothetical protein; KEGG: apb:SAR116_1919 9.7e-07 competence protein F.
   
    0.537
KXG91086.1
KEGG: ols:Olsu_0735 7.8e-232 exonuclease RecJ K07462; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.524
KXG89806.1
DNA-binding helix-turn-helix protein; KEGG: sgg:SGGBAA2069_c10720 2.4e-06 transcriptional regulator.
       0.505
KXG90768.1
Prephenate dehydrogenase; KEGG: ova:OBV_37820 7.7e-51 putative dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
  
    0.501
topA
DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...]
  
  
 0.483
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.480
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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