STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89806.1DNA-binding helix-turn-helix protein; KEGG: sgg:SGGBAA2069_c10720 2.4e-06 transcriptional regulator. (62 aa)    
Predicted Functional Partners:
KXG89807.1
Hypothetical protein.
       0.697
KXG89805.1
DNA-binding helix-turn-helix protein; KEGG: apb:SAR116_1068 0.0011 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.584
KXG89808.1
Hypothetical protein.
       0.521
KXG89809.1
Hypothetical protein.
       0.521
KXG89810.1
Hypothetical protein.
       0.521
KXG89804.1
Site-specific recombinase, phage integrase family; KEGG: bqy:MUS_1239 5.5e-20 ATP synthase C chain (lipid-binding protein)(dicyclohexylcarbodiimide-binding protein); Psort location: Cytoplasmic, score: 7.50; Belongs to the 'phage' integrase family.
       0.505
KXG89812.1
Hypothetical protein; KEGG: edi:EDI_118140 0.0015 nucleosome-binding protein.
  
    0.498
KXG89811.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.493
KXG89813.1
IstB-like ATP-binding protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.484
KXG89814.1
Hypothetical protein; KEGG: dre:553029 0.0090 rad50, im:6906849, si:ch211-79h18.3; RAD50 homolog (S. cerevisiae); K10866 DNA repair protein RAD50.
       0.469
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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