STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89813.1IstB-like ATP-binding protein; Psort location: Cytoplasmic, score: 7.50. (247 aa)    
Predicted Functional Partners:
KXG88530.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.886
KXG89812.1
Hypothetical protein; KEGG: edi:EDI_118140 0.0015 nucleosome-binding protein.
  
  
 0.855
KXG89815.1
KEGG: fma:FMG_0956 1.4e-152 DNA topoisomerase III; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.842
KXG89814.1
Hypothetical protein; KEGG: dre:553029 0.0090 rad50, im:6906849, si:ch211-79h18.3; RAD50 homolog (S. cerevisiae); K10866 DNA repair protein RAD50.
       0.757
KXG89811.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.746
KXG89808.1
Hypothetical protein.
       0.702
KXG89809.1
Hypothetical protein.
       0.702
KXG89810.1
Hypothetical protein.
       0.702
KXG88513.1
Putative replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
    
 
 0.641
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.640
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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