STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89832.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (918 aa)    
Predicted Functional Partners:
KXG89830.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.924
KXG89828.1
TraG/TraD family protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.904
KXG89815.1
KEGG: fma:FMG_0956 1.4e-152 DNA topoisomerase III; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.780
KXG91136.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.777
KXG91135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.769
KXG90564.1
KEGG: efc:EFAU004_00298 2.5e-09 Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.765
KXG89816.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.715
KXG89831.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.678
KXG89829.1
Hypothetical protein.
       0.626
KXG90526.1
Type II/IV secretion system protein; KEGG: reh:H16_A0983 9.1e-80 cpaF3; flp pilus assembly ATPase CpaF K02283; Psort location: Cytoplasmic, score: 9.89.
    
 0.583
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.