STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89834.1NlpC/P60 family protein; KEGG: llt:CVCAS_0900 4.5e-12 yjgB; gamma-D-glutamyl-meso-diaminopimelate peptidase; Psort location: Extracellular, score: 9.60. (527 aa)    
Predicted Functional Partners:
KXG89835.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.746
KXG89836.1
Leucine Rich repeat-containing domain protein; KEGG: tva:TVAG_387410 3.9e-10 viral A-type inclusion protein; K02331 DNA polymerase phi subunit; Psort location: Cellwall, score: 9.21.
       0.639
KXG89832.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.557
KXG89830.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.438
KXG89831.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.432
KXG89829.1
Hypothetical protein.
       0.404
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.