STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89728.1Integrase core domain protein; KEGG: efc:EFAU004_01904 1.2e-22 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 7.50. (156 aa)    
Predicted Functional Partners:
KXG89729.1
Transposase domain protein; KEGG: efc:EFAU004_00210 1.1e-20 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 7.50.
  
 0.995
KXG89730.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.742
KXG89731.1
Hypothetical protein.
       0.597
KXG91317.1
ComEC/Rec2-like protein; KEGG: sfr:Sfri_2742 0.0018 NADH dehydrogenase (quinone) K05903; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.511
KXG90670.1
Transposon DNA-invertase Bin3 family protein; KEGG: apb:SAR116_1288 7.9e-10 Resolvase, N-terminal domain-containing protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.457
KXG89254.1
Hypothetical protein.
     
 0.457
KXG89732.1
Transcriptional regulator, DeoR family; KEGG: hip:CGSHiEE_02055 2.2e-23 fucI; L-fucose isomerase K02430.
  
    0.451
KXG89257.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.430
KXG88889.1
Putative ATP-dependent DNA helicase PcrA; KEGG: ols:Olsu_1470 1.8e-273 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
     
 0.428
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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